TLSMD: Examples

Below are a number of proteins with well known conformational changes. Most of these structures have been solved in multiple conformations which were used to generate conformational change morphs by the good people at the Database of Macromolecular Movements, referred to below as MoveDB. We have run some of these structures through TLSMD to compare the TLSMD predicted flexibility with the conformational change morphs from this database. Links to the TLSMD analysis and MoveDB morphs of these structures are listed below.

HIV Protease

• MoveDB
• TLSMD: 4HVP (Isotropic @ 2.4A)
• TLSMD: 1T3R (Anisotropic @ 1.2A)
• TLSMD: 3HVP (Isotropic @ 2.7A) - No Inhibitor

Orotidine Monophosphate Decarboxylase

• TLSMD: 1DVJ (Complex: Isotropic @ 1.5A)
• TLSMD: 1DV7 (Apo: Isotropic @ 1.8A)

Biotin Carboxylase: Domain Motion, Hinge

• MoveDB
• TLSMD: 1BNC (Isotropic @ 2.4A)
• TLSMD: 1DV2 (Isotropic @ 2.5A)

DNA Beta-Glucosyltransferase: Domain Motion, Hinge

• MoveDB
• TLSMD: 1JG6 (Isotropic @ 1.9A)

Cell Adhesion Molecule CD2: Domain Motion, Hinge (Easy Case!)

• MoveDB
• TLSMD: 1HNF (Isotropic @ 2.5A)

Cyanovirin-N: Domain Motion, Hinge

• MoveDB
• TLSMD: 1L5B (Isotropic @ 2.0A)

GroEL: Complex Motion

• MoveDB
• TLSMD: 1KP8 (Isotropic @ 2.0A)

Citrate Synthase: Domain Motion, Shear (Shear is harder than Hinge)

• MoveDB
• TLSMD: 1IOM (Isotropic @ 1.5A)
• TLSMD: 1CTS (2 Isotropic Params/Residue @ 2.7A)

Arabinose, Leucine, and Galactose Binding Proteins: Suspected Domain Motion, Hinge

• MoveDB
• TLSMD: 1ABE (Isotropic @ 1.7A)
• TLSMD: 2GBP (Isotropic @ 1.9A)
• TLSMD: 2LBP (Isotropic @ 2.4A)

Carbonic Anhydrase

• TLSMD: 1LUG (Isotropic @ 0.96A)

Yeast and Leishmania Major Oxygen-Dependent Coproporphyrinogen Oxidase

• TLSMD: 1VJU (Isotropic @ 1.4A)

---

Last Modified: 29 March 2010