MAD phasing - part 3

Solving the equations

Now I'm going to simplify the notation a bit and rewrite the previous equation so that the variables we want to solve for more or less match the labels in our original diagram



Each of our measurements of F(h) at some wavelength gives us one instance of the equation above, and the separate instances may be treated as a system of simultaneous equations from which we want to obtain the quantities FA, FT, and Delta(phi). Actually we have two measurements for each wavelength, because the observation for F-(h) may be treated as an observation of F+(h) with the value of f'' inverted. So to obtain values of our three unknowns we will need at least three observations, which is to say data collected at two wavelengths with distinct scattering factors. Obviously it is better to be over-determined, so we would prefer data collected at three or more wavelengths .

Now as written above, the equations are not linear. To solve them in practice (or at least as in the code implemented in the MADLSQ program [Hendrickson, 1985]) we treat them instead as a set of linear equations in 4 unknowns:

|F(h)|2 = P1 + a(lambda)P2 + b(lambda)P3 + c(lambda)P4

and enforce the fundamental identity (sin2 + cos2 = 1) via the addition of a Lagrangian constraint:

0 = P1*P2 - P3*P3 - P4*P4

We then substitute in to find the quantities we really want:

|FT| = sqrt(P1)
|FA| = sqrt(P2)
DeltaPhi = arctan(P4/P3).

The treatment of data collected from crystals with more than one type of anomalous scattering atoms is exactly parallel, with the addition of two new quantities to be estimated for each new scattering type k: |FAk| and DeltaPhik . So for two anomalous scattering types we have 5 unknowns and we will need data from a minimum of three wavelengths (F+ and F- at each of 3 wavelengths = 6 observations to derive 5 unknowns).


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Ethan A Merritt ©1995-2001/ merritt@u.washington.edu / Biomolecular Structure Center at UW