Raster3D is distributed as source code (mostly Fortran, with a few C routines), so it should run on anything that has Fortran and C compilers installed.
The source distribution builds smoothly under linux. I am also now providing RPM packages of the source and binaries compiled with the Intel optimizing compiler as well as versions compiled with gfortran. The Intel versions run approximately 20% faster.
The Raster3D home page also has 32-bit executables for OSX 10.5. You may also be able to find executables in the Fink collection, although these may not be totally current. Or you can build from source.
Raster3D does not depend on graphics hardware of any sort.
Many thanks to Suhaib Siddiqi, who contributed a set of Windows binaries for version 2.6c. Preparing a Windows build of Version 3.0 is in progress. If you can help, let me know.
The most recent version being distributed is Version 3.0-3
(March 2014). Here are the
Raster3D is distributed with several utility programs (notably balls and rods) for creating input files directly from PDB format atomic coordinate files. You can read about these in the Raster3D manual. Other programs which are capable of generating files used by Raster3D include:
Yes, it is possible to keep the labels from a Molscript V1.4 picture when you convert it to Raster3D. I don't recommend this procedure, but here is a summary of how to do it if you really want to.
Molscript V2 is a whole other story, and can pass through labels to Raster3D by itself.
Raster3D does contain label support now, including stereo labels. The problem is that not many of the higher level programs have been modified to pass the label information through to Raster3D. Here is a short animation demonstrating labels generated from example 7 in the set distributed with Raster3D.
There is a utility program in Raster3D called stereo3d. It will take any [mono] input file to render, and produce a side-by-side stereo pair of the same scene.
You can have additional non-shadowing light sources. These are specified as objects using a new object type GLOWLIGHT (type 13).
The easiest way is to add an option to the render command line:
render -bg white < infile > figure.png
The first thing you have to realize is that there is a fundamental difference
between a raster image (which is what Raster3D produces) and a PostScript
file. The PostScript language is designed to describe characters, lines,
and shapes in terms of coordinates on a page of a certain physical size.
A raster image knows nothing about characters, lines, shapes, or pages of
any size; it's just a bunch of colored dots (pixels). It is possible to
describe a pixel dump in PostScript, but unless you are extremely careful
the image quality may degrade substantially.
Do not convert a raster image into PostScript unless you really, really have to.
You must know the exact size of your image in pixels and the physical resolution of the PostScript device (your printer) in pixels-per-inch.
You will have to do it by hand.
In case of true need, here is how to convert your image to PostScript using ImageMagick
TIFF support requires linking to an external library. Your local copy of the render may have been built without this. Either find another copy of the program that was linked to libtiff, or rebuild the render program yourself after first making sure you have the tiff library installed.
But converting from PNG to TIFF is easy. I recommend installing
ImageMagick and using the command
convert fig.png fig.tiff
If you are doing this at the request of a publisher, they probably expect an uncompressed file. In this case use the command
convert -compress none fig.png fig.tiff
Back to top Raster3D homepageEthan A Merritt / email@example.com / Biomolecular Structure Center at UW