26 Mar 2010JobID: TLSMD7765_TeSfwMfVTLSMD Version 1.4.1

3HVP: Chain A Partitioned by 1 TLS Groups


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Analysis of TLS Group 1 Chain Segments (overall rmsd_b=5.56 and residual=0.49)
Input StructureTLS Predictions
ColorSegmentResiduesAtoms<B>Brmsd<Aniso>RMSD BTr Beval(L) DEG2<B><Aniso>
blue1-9999758 17.0 9.891.00 5.58 3.2 9.73, 4.16, 0.00 17.00.55


Mean BFactor Analysis
3HVP_CHAINA_NTLS1_BMEAN

Comparison of TLS predicted B factors with experimental (input) B factors.





Translation Analysis of Tr
3HVP_CHAINA_NTLS1_TRANSLATION

This graph shows the TLS group translational displacement magnitude of the three principal components of the reduced T tensor at a isoprobability magnitude of 85%. The line colors are the same as those used for the TLS groups in the various structure visualizations.



Screw Displacement Analysis
3HVP_CHAINA_NTLS1_LIBRATION

This graph shows the displacement of main chain atoms implied by the three screw axes of the TLS group to which they belong. The screw displacement axes are calculated in terms of a Gaussian variance-covariance tensor, and displacement magnitude is shown at a 85% isoprobability magnitude like the translational displacement. Protein segments undergoing hinge-like motion show up as peaks in this graph.



Deviation of Observed CA Atom B-Factors From TLS Model
3HVP_CHAINA_NTLS1_CADIFF

This graph assesses the quality of the TLS prediction for each residue by graphing the difference between the refined (input) main chain atom B factors and the corresponding B factors implied by the TLS model alone. If the TLS model were a perfect description of the observed thermal motion described by the input structural model, this plot would consist of a line at 0.



RMSD Deviation of Observed vs. TLS Predicted B Factors
3HVP_CHAINA_NTLS1_RMSD

This plot is similar to the plot above, except that instead of plotting (Bpred - Bobs) for the CA atom only, the colored line plots the RMSD of |Bpred-Bobs| for all atoms in the residue. If the TLSMD model were a perfect description of the input B values, then the colored line would be a horizontal line at 0.


Distribution Histogram of TLS Group 1-99
3HVP_CHAINA_TLSA1_99_BoBc
26 Mar 2010JobID: TLSMD7765_TeSfwMfVTLSMD Version 1.4.1 Released 11 February 2010