30 Mar 2010JobID: TLSMD7784_zxWfiZTDTLSMD Version 1.4.1

1KP8: Chain L Partitioned by 13 TLS Groups


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Analysis of TLS Group 13 Chain Segments (overall rmsd_b=3.84 and residual=1.24)
Input StructureTLS Predictions
ColorSegmentResiduesAtoms<B>Brmsd<Aniso>RMSD BTr Beval(L) DEG2<B><Aniso>
blue2-1716115 43.2 6.621.00 4.30 38.6 0.00, 19.47, 0.00 43.20.87
green18-7861454 42.810.601.00 5.02 32.6 0.00, 3.34, 10.07 42.80.78
magenta79-15072498 46.314.211.00 4.88 28.610.93, 4.56, 0.00 46.30.72
red151-18333231 80.7 8.091.00 3.34 69.7 0.72, 9.46, 5.70 80.70.90
cyan184-22138306109.813.891.00 3.73107.3 0.00, 3.85, 0.00109.80.84
yellow222-27453391132.711.111.00 4.80119.8 3.17, 0.48, 0.00132.70.90
violet275-30329209100.910.041.00 3.68 96.212.43, 0.00, 0.00100.90.89
purpleblue304-32017127126.2 9.761.00 3.05125.1 0.00, 3.75, 0.00126.20.92
salmon321-36747372 93.7 7.451.00 3.96 80.8 0.00, 8.31, 4.27 93.70.91
lime368-40336261 84.712.041.00 4.00 79.5 0.00, 5.23, 0.00 84.70.84
slate404-44441286 43.9 9.671.00 4.73 34.4 0.00, 1.80, 13.68 43.90.81
bluegreen445-49450370 46.3 9.011.00 4.12 22.210.50, 0.00, 3.75 46.30.81
hotpink495-52632235 42.813.341.00 3.98 32.817.19, 0.00, 1.18 42.80.75


Mean BFactor Analysis
1KP8_CHAINL_NTLS13_BMEAN

Comparison of TLS predicted B factors with experimental (input) B factors.



RMSD B Values of Combined TLS Groups
2-1718-7879-150151-183184-221222-274275-303304-320321-367368-403404-444445-494495-526
2-17 2.59 4.78 6.33 5.45 8.79 8.57 7.58 7.20 7.56 5.86 5.94 4.78 4.77
18-78 4.78 4.11 5.70 7.43 13.76 11.47 7.91 6.43 8.59 7.98 5.73 5.24 6.13
79-150 6.33 5.70 4.27 5.91 9.97 9.04 7.87 6.22 7.67 6.89 5.14 5.59 5.68
151-183 5.45 7.43 5.91 3.34 7.37 6.32 4.49 5.01 5.00 5.43 6.76 7.92 5.79
184-221 8.79 13.76 9.97 7.37 3.69 4.73 4.44 4.10 4.99 7.08 8.51 10.81 9.03
222-274 8.57 11.47 9.04 6.32 4.73 3.87 5.30 4.09 6.04 5.42 7.68 10.05 8.56
275-303 7.58 7.91 7.87 4.49 4.44 5.30 3.65 5.74 5.34 4.99 6.82 8.46 7.64
304-320 7.20 6.43 6.22 5.01 4.10 4.09 5.74 2.68 5.24 4.34 6.31 6.44 6.24
321-367 7.56 8.59 7.67 5.00 4.99 6.04 5.34 5.24 3.92 5.48 6.46 8.06 8.09
368-403 5.86 7.98 6.89 5.43 7.08 5.42 4.99 4.34 5.48 3.18 6.76 8.02 6.27
404-444 5.94 5.73 5.14 6.76 8.51 7.68 6.82 6.31 6.46 6.76 4.22 5.48 5.41
445-494 4.78 5.24 5.59 7.92 10.81 10.05 8.46 6.44 8.06 8.02 5.48 4.11 4.87
495-526 4.77 6.13 5.68 5.79 9.03 8.56 7.64 6.24 8.09 6.27 5.41 4.87 3.70

The TLSMD optimization algorithm models TLS groups as sequential segments of a protein or DNA/RNA chain. This matrix shows the RMSD B values of the individual groups on the diagonal, and the RMSD B values of combined groups as off-diagonal elements. This helps identify non-contiguous protein segments which may be combined into a single TLS group.



Translation Analysis of Tr
1KP8_CHAINL_NTLS13_TRANSLATION

This graph shows the TLS group translational displacement magnitude of the three principal components of the reduced T tensor at a isoprobability magnitude of 85%. The line colors are the same as those used for the TLS groups in the various structure visualizations.



Screw Displacement Analysis
1KP8_CHAINL_NTLS13_LIBRATION

This graph shows the displacement of main chain atoms implied by the three screw axes of the TLS group to which they belong. The screw displacement axes are calculated in terms of a Gaussian variance-covariance tensor, and displacement magnitude is shown at a 85% isoprobability magnitude like the translational displacement. Protein segments undergoing hinge-like motion show up as peaks in this graph.



Deviation of Observed CA Atom B-Factors From TLS Model
1KP8_CHAINL_NTLS13_CADIFF

This graph assesses the quality of the TLS prediction for each residue by graphing the difference between the refined (input) main chain atom B factors and the corresponding B factors implied by the TLS model alone. If the TLS model were a perfect description of the observed thermal motion described by the input structural model, this plot would consist of a line at 0.



RMSD Deviation of Observed vs. TLS Predicted B Factors
1KP8_CHAINL_NTLS13_RMSD

This plot is similar to the plot above, except that instead of plotting (Bpred - Bobs) for the CA atom only, the colored line plots the RMSD of |Bpred-Bobs| for all atoms in the residue. If the TLSMD model were a perfect description of the input B values, then the colored line would be a horizontal line at 0.


Distribution Histogram of TLS Group 2-17
1KP8_CHAINL_TLSL2_17_BoBc

Distribution Histogram of TLS Group 18-78
1KP8_CHAINL_TLSL18_78_BoBc

Distribution Histogram of TLS Group 79-150
1KP8_CHAINL_TLSL79_150_BoBc

Distribution Histogram of TLS Group 151-183
1KP8_CHAINL_TLSL151_183_BoBc

Distribution Histogram of TLS Group 184-221
1KP8_CHAINL_TLSL184_221_BoBc

Distribution Histogram of TLS Group 222-274
1KP8_CHAINL_TLSL222_274_BoBc

Distribution Histogram of TLS Group 275-303
1KP8_CHAINL_TLSL275_303_BoBc

Distribution Histogram of TLS Group 304-320
1KP8_CHAINL_TLSL304_320_BoBc

Distribution Histogram of TLS Group 321-367
1KP8_CHAINL_TLSL321_367_BoBc

Distribution Histogram of TLS Group 368-403
1KP8_CHAINL_TLSL368_403_BoBc

Distribution Histogram of TLS Group 404-444
1KP8_CHAINL_TLSL404_444_BoBc

Distribution Histogram of TLS Group 445-494
1KP8_CHAINL_TLSL445_494_BoBc

Distribution Histogram of TLS Group 495-526
1KP8_CHAINL_TLSL495_526_BoBc
30 Mar 2010JobID: TLSMD7784_zxWfiZTDTLSMD Version 1.4.1 Released 11 February 2010