30 Mar 2010JobID: TLSMD7784_zxWfiZTDTLSMD Version 1.4.1

1KP8: Chain E Partitioned by 19 TLS Groups


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Analysis of TLS Group 19 Chain Segments (overall rmsd_b=3.27 and residual=0.90)
Input StructureTLS Predictions
ColorSegmentResiduesAtoms<B>Brmsd<Aniso>RMSD BTr Beval(L) DEG2<B><Aniso>
blue2-1817126 40.0 7.471.00 4.98 36.018.27, 0.00, 0.00 40.00.86
green19-4830212 36.213.851.00 3.41 26.3 7.36, 3.99, 0.00 36.20.67
magenta49-7830231 39.9 7.811.00 3.73 30.219.09, 4.21, 0.00 39.90.83
red79-12749335 34.4 8.661.00 4.94 22.710.21, 4.79, 0.00 34.40.79
cyan128-1381181 40.8 8.051.00 3.06 32.747.73, 3.65, 0.00 40.80.82
yellow139-16224167 63.5 8.911.00 3.37 53.7 0.00, 8.77, 17.84 63.50.86
violet163-17715106 72.0 8.151.00 3.38 63.124.73, 0.00, 0.00 72.00.89
purpleblue178-20326205 91.8 8.741.00 2.78 81.1 0.00, 3.63, 6.30 91.80.90
salmon204-22623180117.6 4.971.00 2.11 96.7 4.57, 0.68, 0.00117.60.95
lime227-27246340131.6 8.761.00 4.02107.2 2.37, 0.38, 0.00131.60.92
slate273-29422161102.3 6.261.00 2.51 97.6 9.98, 0.00, 0.50102.30.94
bluegreen295-32935261115.914.301.00 3.20 61.2 4.35, 1.30, 0.00115.90.86
hotpink330-35627202120.114.341.00 2.95117.0 0.00, 5.99, 0.00120.10.86
orange357-37923176102.917.611.00 2.85100.5 0.00, 3.06, 0.00102.90.85
yellowgreen380-40021159 82.915.701.00 4.20 80.6 0.00, 12.48, 0.00 82.90.81
blueviolet401-42121142 38.212.551.00 3.21 28.2 9.55, 0.00, 4.51 38.20.71
marine422-44726190 38.1 9.481.00 4.28 23.1 0.00, 9.27, 19.89 38.10.79
olive448-49447346 32.8 6.531.00 3.58 25.0 9.42, 5.12, 0.00 32.80.83
purple495-52632235 35.614.051.00 3.98 28.018.64, 0.00, 0.00 35.60.72


Mean BFactor Analysis
1KP8_CHAINE_NTLS19_BMEAN

Comparison of TLS predicted B factors with experimental (input) B factors.



RMSD B Values of Combined TLS Groups
2-1819-4849-7879-127128-138139-162163-177178-203204-226227-272273-294295-329330-356357-379380-400401-421422-447448-494495-526
2-18 3.66 4.63 4.81 5.12 5.40 4.99 5.51 8.43 7.64 7.82 6.39 6.92 5.60 6.34 5.76 4.61 5.56 4.76 4.95
19-48 4.63 2.58 3.95 4.41 3.74 5.55 5.12 5.70 9.71 8.09 5.84 6.33 4.84 5.03 6.64 3.18 4.28 4.15 4.96
49-78 4.81 3.95 3.40 5.35 4.83 6.41 5.78 6.61 10.00 8.08 6.44 7.42 5.43 6.11 7.22 5.15 4.66 4.57 6.22
79-127 5.12 4.41 5.35 4.34 4.98 4.63 6.46 6.64 9.59 8.24 7.42 9.16 6.77 7.49 6.02 4.51 4.70 4.68 5.27
128-138 5.40 3.74 4.83 4.98 2.69 5.13 6.79 5.67 6.51 5.58 6.07 5.32 6.07 6.57 5.96 4.93 5.64 4.43 4.37
139-162 4.99 5.55 6.41 4.63 5.13 3.27 4.76 5.42 8.28 6.86 6.08 5.82 6.70 6.45 5.19 4.95 4.69 6.10 5.06
163-177 5.51 5.12 5.78 6.46 6.79 4.76 3.17 5.25 8.74 7.11 5.41 5.79 6.36 5.14 6.28 7.23 6.39 5.15 5.62
178-203 8.43 5.70 6.61 6.64 5.67 5.42 5.25 2.74 7.01 5.80 3.74 4.46 5.38 3.78 4.77 5.66 6.46 5.95 8.24
204-226 7.64 9.71 10.00 9.59 6.51 8.28 8.74 7.01 1.95 4.78 4.46 4.74 5.73 5.70 7.32 7.51 8.05 9.23 7.79
227-272 7.82 8.09 8.08 8.24 5.58 6.86 7.11 5.80 4.78 3.14 4.75 3.91 5.14 4.47 5.57 5.74 7.84 8.73 8.01
273-294 6.39 5.84 6.44 7.42 6.07 6.08 5.41 3.74 4.46 4.75 2.15 4.30 5.05 3.11 6.05 5.91 7.21 6.60 7.28
295-329 6.92 6.33 7.42 9.16 5.32 5.82 5.79 4.46 4.74 3.91 4.30 3.17 4.07 4.06 5.30 5.70 7.15 8.37 7.91
330-356 5.60 4.84 5.43 6.77 6.07 6.70 6.36 5.38 5.73 5.14 5.05 4.07 2.53 5.93 6.42 6.55 6.48 6.44 6.25
357-379 6.34 5.03 6.11 7.49 6.57 6.45 5.14 3.78 5.70 4.47 3.11 4.06 5.93 2.56 6.27 7.09 7.63 6.50 7.51
380-400 5.76 6.64 7.22 6.02 5.96 5.19 6.28 4.77 7.32 5.57 6.05 5.30 6.42 6.27 3.89 5.77 6.05 6.42 5.82
401-421 4.61 3.18 5.15 4.51 4.93 4.95 7.23 5.66 7.51 5.74 5.91 5.70 6.55 7.09 5.77 3.13 5.86 4.21 4.03
422-447 5.56 4.28 4.66 4.70 5.64 4.69 6.39 6.46 8.05 7.84 7.21 7.15 6.48 7.63 6.05 5.86 3.75 5.92 5.58
448-494 4.76 4.15 4.57 4.68 4.43 6.10 5.15 5.95 9.23 8.73 6.60 8.37 6.44 6.50 6.42 4.21 5.92 3.53 4.69
495-526 4.95 4.96 6.22 5.27 4.37 5.06 5.62 8.24 7.79 8.01 7.28 7.91 6.25 7.51 5.82 4.03 5.58 4.69 3.79

The TLSMD optimization algorithm models TLS groups as sequential segments of a protein or DNA/RNA chain. This matrix shows the RMSD B values of the individual groups on the diagonal, and the RMSD B values of combined groups as off-diagonal elements. This helps identify non-contiguous protein segments which may be combined into a single TLS group.



Translation Analysis of Tr
1KP8_CHAINE_NTLS19_TRANSLATION

This graph shows the TLS group translational displacement magnitude of the three principal components of the reduced T tensor at a isoprobability magnitude of 85%. The line colors are the same as those used for the TLS groups in the various structure visualizations.



Screw Displacement Analysis
1KP8_CHAINE_NTLS19_LIBRATION

This graph shows the displacement of main chain atoms implied by the three screw axes of the TLS group to which they belong. The screw displacement axes are calculated in terms of a Gaussian variance-covariance tensor, and displacement magnitude is shown at a 85% isoprobability magnitude like the translational displacement. Protein segments undergoing hinge-like motion show up as peaks in this graph.



Deviation of Observed CA Atom B-Factors From TLS Model
1KP8_CHAINE_NTLS19_CADIFF

This graph assesses the quality of the TLS prediction for each residue by graphing the difference between the refined (input) main chain atom B factors and the corresponding B factors implied by the TLS model alone. If the TLS model were a perfect description of the observed thermal motion described by the input structural model, this plot would consist of a line at 0.



RMSD Deviation of Observed vs. TLS Predicted B Factors
1KP8_CHAINE_NTLS19_RMSD

This plot is similar to the plot above, except that instead of plotting (Bpred - Bobs) for the CA atom only, the colored line plots the RMSD of |Bpred-Bobs| for all atoms in the residue. If the TLSMD model were a perfect description of the input B values, then the colored line would be a horizontal line at 0.


Distribution Histogram of TLS Group 2-18
1KP8_CHAINE_TLSE2_18_BoBc

Distribution Histogram of TLS Group 19-48
1KP8_CHAINE_TLSE19_48_BoBc

Distribution Histogram of TLS Group 49-78
1KP8_CHAINE_TLSE49_78_BoBc

Distribution Histogram of TLS Group 79-127
1KP8_CHAINE_TLSE79_127_BoBc

Distribution Histogram of TLS Group 128-138
1KP8_CHAINE_TLSE128_138_BoBc

Distribution Histogram of TLS Group 139-162
1KP8_CHAINE_TLSE139_162_BoBc

Distribution Histogram of TLS Group 163-177
1KP8_CHAINE_TLSE163_177_BoBc

Distribution Histogram of TLS Group 178-203
1KP8_CHAINE_TLSE178_203_BoBc

Distribution Histogram of TLS Group 204-226
1KP8_CHAINE_TLSE204_226_BoBc

Distribution Histogram of TLS Group 227-272
1KP8_CHAINE_TLSE227_272_BoBc

Distribution Histogram of TLS Group 273-294
1KP8_CHAINE_TLSE273_294_BoBc

Distribution Histogram of TLS Group 295-329
1KP8_CHAINE_TLSE295_329_BoBc

Distribution Histogram of TLS Group 330-356
1KP8_CHAINE_TLSE330_356_BoBc

Distribution Histogram of TLS Group 357-379
1KP8_CHAINE_TLSE357_379_BoBc

Distribution Histogram of TLS Group 380-400
1KP8_CHAINE_TLSE380_400_BoBc

Distribution Histogram of TLS Group 401-421
1KP8_CHAINE_TLSE401_421_BoBc

Distribution Histogram of TLS Group 422-447
1KP8_CHAINE_TLSE422_447_BoBc

Distribution Histogram of TLS Group 448-494
1KP8_CHAINE_TLSE448_494_BoBc

Distribution Histogram of TLS Group 495-526
1KP8_CHAINE_TLSE495_526_BoBc
30 Mar 2010JobID: TLSMD7784_zxWfiZTDTLSMD Version 1.4.1 Released 11 February 2010