26 Mar 2010JobID: TLSMD7775_MdtkYfhaTLSMD Version 1.4.1

1ABE: Chain A Partitioned by 6 TLS Groups


Back to Index    Back to Chain A Analysis

Analysis of TLS Group 6 Chain Segments (overall rmsd_b=4.68 and residual=1.07)
Input StructureTLS Predictions
ColorSegmentResiduesAtoms<B>Brmsd<Aniso>RMSD BTr Beval(L) DEG2<B><Aniso>
blue2-3433273 16.2 9.391.00 4.80 7.715.31, 0.00, 5.40 16.20.56
green35-12288645 18.6 8.781.00 4.66 2.6 9.06, 0.08, 2.85 18.60.61
magenta123-15028224 20.410.361.00 5.50 1.426.41, 0.00, 5.90 20.40.63
red151-272122908 14.9 6.911.00 4.57 6.8 5.23, 1.85, 0.00 14.90.67
cyan273-29826215 23.311.141.00 5.61 6.319.35, 0.00, 3.33 23.30.61
yellow299-306851 53.215.331.00 4.94 38.246.71, 11.08, 0.00 53.20.74


Mean BFactor Analysis
1ABE_CHAINA_NTLS6_BMEAN

Comparison of TLS predicted B factors with experimental (input) B factors.



RMSD B Values of Combined TLS Groups
2-3435-122123-150151-272273-298299-306
2-34 4.32 5.19 6.25 5.05 6.42 6.88
35-122 5.19 4.66 5.76 5.10 5.31 6.05
123-150 6.25 5.76 5.03 5.54 6.71 5.99
151-272 5.05 5.10 5.54 4.56 5.32 7.32
273-298 6.42 5.31 6.71 5.32 5.33 7.41
299-306 6.88 6.05 5.99 7.32 7.41 4.66

The TLSMD optimization algorithm models TLS groups as sequential segments of a protein or DNA/RNA chain. This matrix shows the RMSD B values of the individual groups on the diagonal, and the RMSD B values of combined groups as off-diagonal elements. This helps identify non-contiguous protein segments which may be combined into a single TLS group.



Translation Analysis of Tr
1ABE_CHAINA_NTLS6_TRANSLATION

This graph shows the TLS group translational displacement magnitude of the three principal components of the reduced T tensor at a isoprobability magnitude of 85%. The line colors are the same as those used for the TLS groups in the various structure visualizations.



Screw Displacement Analysis
1ABE_CHAINA_NTLS6_LIBRATION

This graph shows the displacement of main chain atoms implied by the three screw axes of the TLS group to which they belong. The screw displacement axes are calculated in terms of a Gaussian variance-covariance tensor, and displacement magnitude is shown at a 85% isoprobability magnitude like the translational displacement. Protein segments undergoing hinge-like motion show up as peaks in this graph.



Deviation of Observed CA Atom B-Factors From TLS Model
1ABE_CHAINA_NTLS6_CADIFF

This graph assesses the quality of the TLS prediction for each residue by graphing the difference between the refined (input) main chain atom B factors and the corresponding B factors implied by the TLS model alone. If the TLS model were a perfect description of the observed thermal motion described by the input structural model, this plot would consist of a line at 0.



RMSD Deviation of Observed vs. TLS Predicted B Factors
1ABE_CHAINA_NTLS6_RMSD

This plot is similar to the plot above, except that instead of plotting (Bpred - Bobs) for the CA atom only, the colored line plots the RMSD of |Bpred-Bobs| for all atoms in the residue. If the TLSMD model were a perfect description of the input B values, then the colored line would be a horizontal line at 0.


Distribution Histogram of TLS Group 2-34
1ABE_CHAINA_TLSA2_34_BoBc

Distribution Histogram of TLS Group 35-122
1ABE_CHAINA_TLSA35_122_BoBc

Distribution Histogram of TLS Group 123-150
1ABE_CHAINA_TLSA123_150_BoBc

Distribution Histogram of TLS Group 151-272
1ABE_CHAINA_TLSA151_272_BoBc

Distribution Histogram of TLS Group 273-298
1ABE_CHAINA_TLSA273_298_BoBc

Distribution Histogram of TLS Group 299-306
1ABE_CHAINA_TLSA299_306_BoBc
26 Mar 2010JobID: TLSMD7775_MdtkYfhaTLSMD Version 1.4.1 Released 11 February 2010