CrystaLinks - Computer Programs

• Raster3D Program suite for photorealistic molecular graphics
• Parvati Validation server for anisotropic models of protein structure
• TLSMD Web server for detection and analysis of TLS motion in proteins
• Ethan's collection of XPLOR scripts for refinement using a Babinet bulk solvent correction
• mmLib Python Macromolecular Library (mmLib)
• gnuplot version 4.1 on SourceForge and my gnuplot development projects

• Crystallographic Source Code Museum old code
• bio.perl.org Perl scripts for biology
• CCP4 ( UK master site) and ( mirror site at SDSC) | CCP4 bulletin board archives
• CCP11 ( Biosequence & Structure Analysis)
• CCP14 ( Single crystal and powder diffraction{)
• Kinemage and other programs from the Richardson lab at Duke University
• Molecular Visualization programs listed at SDSC
• MOSFLM (queries to andrew@mrc-lmb.cam.ac.uk).
• NIH guide to molecular modeling A good list of software for modeling/graphics/etc
• PDB/RCSB Software for structure determination and analysis
• SAL Scientific Applications on Linux
• SINCRIS collection (Serveur d'Information National pour la CRIStallographie)
• UCSF computer graphics lab, including info on DOCK, MIDAS+ and other distributed software
• WHAT_CHECK

O | X-PLOR | Molscript | RasMol | SHELXL | HKL (denzo) |

Programs from Uppsala Software Factory

Perl modules

PDB Perl module | BioPerl |

C++ class libraries

Democritos project | CCP11 |

CCP4

CCP4 on Linux | Article from Newsletter 36 |

General Programs

SAL (Scientific Applications for Linux) |